| Rank | Club / Country | Points | 1-yr change |
|---|---|---|---|
| 1 | Flora Tallinn Estonia | 1695 | 46 1726 |
| 2 | FCI Levadia Tallinn Estonia | 1661 | 72 1664 |
| 3 | Nomme Kalju FC (EST) Estonia | 1536 | 195 1554 |
| 4 | Paide Linnameeskond Estonia | 1480 | 252 1468 |
| 5 | FC Infonet Tallinn Estonia | 1476 | 321 1476 |
| 6 | Sillamäe Kalev Estonia | 1462 | 294 1462 |
| 7 | Narva Trans Estonia | 1287 | 997 1319 |
| 8 | Tammeka Estonia | 1257 | 995 1266 |
| 9 | Tallinna JK Legion Estonia | 1255 | 1896 1255 |
| 10 | Tamme Auto Estonia | 1248 | 864 1248 |
| 11 | Warrior Estonia | 1247 | 1155 1247 |
| 12 | FC Kuressaare Estonia | 1245 | 753 1235 |
| 13 | FC Nõmme United Estonia | 1240 | 2377 1250 |
| 14 | Harju Jalgpallikool Estonia | 1226 | 2455 1233 |
| 15 | Johvi FC Lokomotiv Estonia | 1223 | 1715 1223 |
| 16 | Talinna Kalev Estonia | 1220 | 1117 1174 |
| 17 | Tulevik Viljandi Estonia | 1216 | 955 1216 |
| 18 | Lootus Estonia | 1213 | 962 1213 |
| 19 | Maardu Linnameeskond Estonia | 1199 | 2365 1199 |
| 20 | Rakvere JK Tarvas Estonia | 1190 | 2127 1190 |
| 21 | Pärnu JK Vaprus Estonia | 1184 | 2233 1141 |
| 22 | Paernu Linnameeskond Estonia | 1177 | 2036 1177 |
| 23 | Ajax Lasnamäe Estonia | 1173 | 1457 1173 |