| Rank | Club / Country | Points | 1-yr change |
|---|---|---|---|
| 1 | Flora Tallinn Estonia | 1674 | 19 1695 |
| 2 | FCI Levadia Tallinn Estonia | 1665 | 1 1664 |
| 3 | Nomme Kalju FC (EST) Estonia | 1539 | 9 1532 |
| 4 | Paide Linnameeskond Estonia | 1504 | 76 1475 |
| 5 | FC Infonet Tallinn Estonia | 1476 | 9 1476 |
| 6 | Sillamäe Kalev Estonia | 1462 | 8 1462 |
| 7 | Narva Trans Estonia | 1326 | 264 1300 |
| 8 | Tammeka Estonia | 1256 | 43 1255 |
| 9 | Tallinna JK Legion Estonia | 1255 | 18 1255 |
| 10 | Tamme Auto Estonia | 1248 | 49 1248 |
| 11 | Warrior Estonia | 1247 | 48 1247 |
| 12 | FC Kuressaare Estonia | 1238 | 35 1243 |
| 13 | Harju Jalgpallikool Estonia | 1226 | 29 1226 |
| 14 | Johvi FC Lokomotiv Estonia | 1223 | 19 1223 |
| 15 | Tulevik Viljandi Estonia | 1216 | 21 1216 |
| 16 | Lootus Estonia | 1213 | 19 1213 |
| 17 | Pärnu JK Vaprus Estonia | 1209 | 148 1180 |
| 18 | FC Nõmme United Estonia | 1207 | 331 1237 |
| 19 | Maardu Linnameeskond Estonia | 1199 | 11 1199 |
| 20 | Rakvere JK Tarvas Estonia | 1190 | 8 1190 |
| 21 | Talinna Kalev Estonia | 1185 | 229 1222 |
| 22 | Paernu Linnameeskond Estonia | 1177 | 6 1177 |
| 23 | Ajax Lasnamäe Estonia | 1173 | 7 1173 |